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K-Nearest Neighbor (KNN) Analysis on Genes Expression Datasets of Maize Nested Association Mapping (NAM) Showed Confident Classification on Organ-specific Expression
Fitria Widiawati I.a, Nugrahapraja H.b, Fajriyah R.a
a Department of Statistics, Universitas Islam Indonesia, Yogyakarta, Indonesia
b School of Life Sciences and Technology, Institut Teknologi Bandung, Bandung, Indonesia
[vc_row][vc_column][vc_row_inner][vc_column_inner][vc_separator css=”.vc_custom_1624529070653{padding-top: 30px !important;padding-bottom: 30px !important;}”][/vc_column_inner][/vc_row_inner][vc_row_inner layout=”boxed”][vc_column_inner width=”3/4″ css=”.vc_custom_1624695412187{border-right-width: 1px !important;border-right-color: #dddddd !important;border-right-style: solid !important;border-radius: 1px !important;}”][vc_empty_space][megatron_heading title=”Abstract” size=”size-sm” text_align=”text-left”][vc_column_text]© 2018 IEEE.Genes expression data in large data matrix provide challenges in applying analytical methods, interpreting, and drawing conclusions. This study aims to evaluate genes expression classification on different maize lines and different organs (Apex, Root, Shoot, Ear, and Tassel) based on Maize Nested Association Mapping (NAM) datasets using K-Nearest Neighbor (KNN) approach. As a result, we obtained the accuracy value and AUC value of 0. 926 and 0.992 respectively from KNN analysis with k = 5. Besides, we showed the classification of genes expression datasets to distinguish organ-specific expression.[/vc_column_text][vc_empty_space][vc_separator css=”.vc_custom_1624528584150{padding-top: 25px !important;padding-bottom: 25px !important;}”][vc_empty_space][megatron_heading title=”Author keywords” size=”size-sm” text_align=”text-left”][vc_column_text]Accuracy,Analytical method,Association mapping,Genes expression,K nearest neighbor (KNN),Large data[/vc_column_text][vc_empty_space][vc_separator css=”.vc_custom_1624528584150{padding-top: 25px !important;padding-bottom: 25px !important;}”][vc_empty_space][megatron_heading title=”Indexed keywords” size=”size-sm” text_align=”text-left”][vc_column_text]Accuracy,AUC,Classification,Genes Expression,KNN[/vc_column_text][vc_empty_space][vc_separator css=”.vc_custom_1624528584150{padding-top: 25px !important;padding-bottom: 25px !important;}”][vc_empty_space][megatron_heading title=”Funding details” size=”size-sm” text_align=”text-left”][vc_column_text]The author’s RF, work is supported by the Ministry of Research, Technology and Higher Education, the Republic of Indonesia, Research Grant No. 10/SP2H/LT/DRPM/2018[/vc_column_text][vc_empty_space][vc_separator css=”.vc_custom_1624528584150{padding-top: 25px !important;padding-bottom: 25px !important;}”][vc_empty_space][megatron_heading title=”DOI” size=”size-sm” text_align=”text-left”][vc_column_text]https://doi.org/10.1109/BIOMIC.2018.8610577[/vc_column_text][/vc_column_inner][vc_column_inner width=”1/4″][vc_column_text]Widget Plumx[/vc_column_text][/vc_column_inner][/vc_row_inner][/vc_column][/vc_row][vc_row][vc_column][vc_separator css=”.vc_custom_1624528584150{padding-top: 25px !important;padding-bottom: 25px !important;}”][/vc_column][/vc_row]